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personal data approved: 2023. XII. 20.
Personal data
name Gergely Nagy
year of birth 1986
name of institution
doctoral school
DE Doctoral School of Molecular Cellular and Immune Biology (Academic staff member)
the share of work in the different doctoral schools. DE Doctoral School of Molecular Cellular and Immune Biology 100%
Contact details
E-mail address nagygergelymed.unideb.hu
Academic title
scientific degree, title Ph.D.
year degree was obtained 2016
discipline to which degree belongs theoretical medicine
institution granting the degree University of Debrecen
Employment
2013 - University of Debrecen
egyetemi kutató
Thesis topic supervisor
number of doctoral students supervised until now
number of students who fulfilled course requirements
students who obtained their degrees:
  Thesis topic proposals
Research
research area Investigation of gene regulatory sequences by using genomic bioinformatics
research field in which current research is conducted theoretical medicine
Publications
2022

Patsalos Andreas, Halasz Laszlo, Medina-Serpas Miguel A, Berger Wilhelm K, Daniel Bence, Tzerpos Petros, Kiss Máté, Nagy Gergely, Fischer Cornelius, Simandi Zoltan, Varga Tamas, Nagy Laszlo: A growth factor-expressing macrophage subpopulation orchestrates regenerative inflammation via GDF-15, JOURNAL OF EXPERIMENTAL MEDICINE 219: (1) e20210420
type of document: Journal paper/Article
number of independent citations: 18
language: English
URL 
2020

Csumita Mária, Csermely Attila, Horvath Attila, Nagy Gergely, Monori Fanny, Göczi Loránd, Orbea Hans-Acha, Reith Walter, Széles Lajos: Specific enhancer selection by IRF3, IRF5 and IRF9 is determined by ISRE half-sites, 5' and 3' flanking bases, collaborating transcription factors and the chromatin environment in a combinatorial fashion., NUCLEIC ACIDS RESEARCH 48: (2) pp. 589-604.
type of document: Journal paper/Article
number of independent citations: 16
language: English
URL 
2020

Nagy Gergely, Nagy Laszlo: Motif grammar: The basis of the language of gene expression, COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL 18: pp. 2026-2032.
type of document: Journal paper/Article
number of independent citations: 7
language: English
URL 
2020

Daniel Bence, Czimmerer Zsolt, Halasz Laszlo, Boto Pal, Kolostyak Zsuzsanna, Poliska Szilard, Berger Wilhelm K., Tzerpos Petros, Nagy Gergely, Horvath Attila, Hajas Gyorgy, Cseh Timea, Nagy Aniko, Sauer Sascha, Francois-Deleuze Jean, Szatmari Istvan, Bacsi Attila, Nagy Laszlo: The transcription factor EGR2 is the molecular linchpin connecting STAT6 activation to the late, stable epigenomic program of alternative macrophage polarization, GENES & DEVELOPMENT 34: (21-22) pp. 1474-1492.
type of document: Journal paper/Article
number of independent citations: 22
language: English
URL 
2020

Nagy Gergely, Daniel Bence, Cuaranta-Monroy Ixchelt, Nagy Laszlo: Unraveling the Hierarchy of cis and trans Factors That Determine the DNA Binding by Peroxisome Proliferator-Activated Receptor γ, MOLECULAR AND CELLULAR BIOLOGY 40: (7) e00547-19
type of document: Journal paper/Article
number of independent citations: 2
language: English
URL 
2018

Czimmerer Zsolt, Daniel Bence, Horvath Attila, Rückerl Dominik, Nagy Gergely, Kiss Máté, Budai Marietta M., Cuaranta-Monroy Ixchelt, Simandi Zoltan, Steiner Laszlo, Nagy Bela Ifj., Poliska Szilard, Banko Csaba, Bacso Zsolt, Schulman Ira G., Sauer Sascha, Deleuze Jean-Francois, Allen Judith E., Benko Szilvia, Nagy Laszlo: The Transcription Factor STAT6 Mediates Direct Repression of Inflammatory Enhancers and Limits Activation of Alternatively Polarized Macrophages, IMMUNITY 48: (1) pp. 75-90.e6.
type of document: Journal paper/Article
number of independent citations: 148
language: English
URL 
2018

Daniel B, Nagy G, Horvath A, Czimmerer Z, Cuaranta-Monroy I, Poliska S, Hays TT, Sauer S, Francois-Deleuze J, Nagy L: The IL-4/STAT6/PPARgamma signaling axis is driving the expansion of the RXR heterodimer cistrome, providing complex ligand responsiveness in macrophages., NUCLEIC ACIDS RESEARCH 46: (9) pp. 4425-4439.
type of document: Journal paper/Article
number of independent citations: 38
language: English
URL 
2018

Dániel Bence, Nagy Gergely, Czimmerer Zsolt, Horváth Attila, Hammers David W., Cuaranta-Monroy Ixchelt, Póliska Szilárd, Tzerpos Petros, Kolostyák Zsuzsanna, Hays Tristan T., Patsalos Andreas, Houtman René, Sauer Sascha, Francois-Deleuze Jean, Rastinejad Fraydoon, Bálint Bálint László, Sweeney H. Lee, Nagy László: The Nuclear Receptor PPARγ Controls Progressive Macrophage Polarization as a Ligand-Insensitive Epigenomic Ratchet of Transcriptional Memory, IMMUNITY 49: (4) pp. 615-626.e6.
type of document: Journal paper/Article
number of independent citations: 91
language: English
URL 
2017

Dóra Bojcsuk, Gergely Nagy, Balint L Balint: Inducible super-enhancers are organized based on canonical signal-specific transcription factor binding elements, NUCLEIC ACIDS RESEARCH 45: (7) pp. 3693-3706.
type of document: Journal paper/Article
number of independent citations: 38
language: English
URL 
2016

Nagy G, Czipa E, Steiner L, Nagy T, Pongor S, Nagy L, Barta E: Motif oriented high-resolution analysis of ChIP-seq data reveals the topological order of CTCF and cohesin proteins on DNA., BMC GENOMICS 17: (1) 637
type of document: Journal paper/Article
number of independent citations: 19
language: English
URL 
Number of independent citations to these publications:399 
Scientometric data
list of publications and citations
number of scientific publications that meet accreditation criteria:
26
number of scientific publications:
26
monographs and professional books:
0
monographs/books in which chapters/sections were contributed:
0 
number of independent citations to scientific publications and creative works:
740

 
All rights reserved © 2007, Hungarian Doctoral Council. Doctoral Council registration number at commissioner for data protection: 02003/0001. Program version: 2.2358 ( 2017. X. 31. )